2014
Magnain, Caroline; Augustinack, Jean C; Reuter, Martin; Wachinger, Christian; Frosch, Matthew P; Ragan, Timothy; Akkin, Taner; Wedeen, Van J; Boas, David A; Fischl, Bruce
Blockface histology with optical coherence tomography: A comparison with Nissl staining Journal Article
In: NeuroImage, vol. 84, pp. 524–533, 2014.
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Wachinger, Christian; Golland, Polina
Atlas-based under-segmentation Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 315–322, Springer International Publishing 2014.
@inproceedings{wachinger2014atlas,
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Wachinger, Christian; Golland, Polina; Reuter, Martin
BrainPrint: identifying subjects by their brain Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 41–48, Springer International Publishing 2014.
@inproceedings{wachinger2014brainprint,
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Wachinger, C; Batmanghelich, K; Golland, P; Reuter, M
BrainPrint in the Computer-Aided Diagnosis of Alzheimer’s Disease Proceedings Article
In: Proc MICCAI Workshop Challenge on Computer-Aided Diagnosis of Dementia Based on Structural MRI Data, pp. 129–138, 2014.
@inproceedings{wachinger2014brainprintb,
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Wachinger, Christian; Brennan, Matthew; Sharp, Greg C; Golland, Polina
On the importance of location and features for the patch-based segmentation of parotid glands Proceedings Article
In: MICCAI Workshop on Image-Guided Adaptive Radiation Therapy, 2014.
@inproceedings{wachinger2014importance,
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Wachinger, C; Batmanghelich, K; Golland, P; Reuter, M
BrainPrint in the computer-aided diagnosis of Alzheimer’s disease Proceedings Article
In: Proc MICCAI workshop challenge on computer-aided diagnosis of dementia based on structural MRI data, pp. 129–138, 2014.
@inproceedings{wachinger2014brainprintb,
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2013
Gutierrez-Becker, Benjamin; Cosio, Fernando Arambula; Huerta, Mario E Guzman; Benavides-Serralde, Jesus Andres; Camargo-Marin, Lisbeth; Medina Banuelos, Veronica journal=Medical & biological engineering & computing
Automatic segmentation of the fetal cerebellum on ultrasound volumes, using a 3D statistical shape model Journal Article
In: vol. 51, no. 9, pp. 1021–1030, 2013.
@article{gutierrez2013automatic,
title = {Automatic segmentation of the fetal cerebellum on ultrasound volumes, using a 3D statistical shape model},
author = {Gutierrez-Becker, Benjamin and Cosio, Fernando Arambula and Huerta, Mario E Guzman and Benavides-Serralde, Jesus Andres and Camargo-Marin, Lisbeth and Medina Banuelos, Veronica} journal={Medical & biological engineering & computing},
year = {2013},
date = {2013-01-01},
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Wachinger, Christian; Navab, Nassir
Simultaneous registration of multiple images: similarity metrics and efficient optimization Journal Article
In: Pattern Analysis and Machine Intelligence, IEEE Transactions on, vol. 35, no. 5, pp. 1221–1233, 2013.
@article{wachinger2013simultaneous,
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Chen, George H; Wachinger, Christian; Golland, Polina
Sparse projections of medical images onto manifolds Proceedings Article
In: International Conference on Information Processing in Medical Imaging, pp. 292–303, Springer Berlin Heidelberg 2013.
@inproceedings{chen2013sparse,
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Wachinger, Christian; Sharp, Gregory C; Golland, Polina
Contour-driven regression for label inference in atlas-based segmentation Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 211–218, Springer Berlin Heidelberg 2013.
@inproceedings{wachinger2013contour,
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year = {2013},
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Wachinger, Christian; Golland, Polina; Fischl, Bruce; Reuter, Martin
Robust registration of multi-modal images Journal Article
In: Human Brain Mapping, 2013.
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2012
Wachinger, Christian; Navab, Nassir
Entropy and Laplacian images: Structural representations for multi-modal registration Journal Article
In: Medical Image Analysis, vol. 16, no. 1, pp. 1–17, 2012.
@article{wachinger2012entropy,
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date = {2012-01-01},
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Mateus, Diana; Wachinger, Christian; Atasoy, Selen; Schwarz, Loren; Navab, Nassir
Learning manifolds: design analysis for medical applications Journal Article
In: Machine Learning in Computer-Aided Diagnosis: Medical Imaging Intelligence and Analysis: Medical Imaging Intelligence and Analysis, pp. 374, 2012.
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Wachinger, Christian; Klein, Tassilo; Navab, Nassir
The 2D analytic signal for envelope detection and feature extraction on ultrasound images Journal Article
In: Medical Image Analysis, vol. 16, no. 6, pp. 1073–1084, 2012.
@article{wachinger20122d,
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Wachinger, Christian; Klein, Tassilo; Navab, Nassir
Locally adaptive Nakagami-based ultrasound similarity measures Journal Article
In: Ultrasonics, vol. 52, no. 4, pp. 547–554, 2012.
@article{wachinger2012locally,
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Wachinger, Christian; Yigitsoy, Mehmet; Rijkhorst, Erik-Jan; Navab, Nassir
Manifold learning for image-based breathing gating in ultrasound and MRI Journal Article
In: Medical Image Analysis, vol. 16, no. 4, pp. 806–818, 2012.
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Wachinger, Christian; Navab, Nassir
A contextual maximum likelihood framework for modeling image registration Proceedings Article
In: Computer Vision and Pattern Recognition (CVPR), 2012 IEEE Conference on, pp. 1995–2002, IEEE 2012.
@inproceedings{wachinger2012contextual,
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Wachinger, Christian; Golland, Polina
Spectral label fusion Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 410–417, Springer Berlin Heidelberg 2012.
@inproceedings{wachinger2012spectral,
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author = {Wachinger, Christian and Golland, Polina},
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date = {2012-01-01},
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Moradi, Mehdi; Wachinger, Christian; Fedorov, Andriy; Wells, William M; Kapur, Tina; Wolfsberger, Luciant D; Nguyen, Paul; Tempany, Clare M
MRI confirmed prostate tissue classification with Laplacian eigenmaps of ultrasound RF spectra Proceedings Article
In: International Workshop on Machine Learning in Medical Imaging, pp. 19–26, Springer Berlin Heidelberg 2012.
@inproceedings{moradi2012mri,
title = {MRI confirmed prostate tissue classification with Laplacian eigenmaps of ultrasound RF spectra},
author = {Moradi, Mehdi and Wachinger, Christian and Fedorov, Andriy and Wells, William M and Kapur, Tina and Wolfsberger, Luciant D and Nguyen, Paul and Tempany, Clare M},
year = {2012},
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2011
Wachinger, Christian; Klein, Tassilo; Navab, Nassir
The 2D analytic signal on RF and B-mode ultrasound images Proceedings Article
In: Biennial International Conference on Information Processing in Medical Imaging, pp. 359–370, Springer Berlin Heidelberg 2011.
@inproceedings{wachinger20112d,
title = {The 2D analytic signal on RF and B-mode ultrasound images},
author = {Wachinger, Christian and Klein, Tassilo and Navab, Nassir},
year = {2011},
date = {2011-01-01},
booktitle = {Biennial International Conference on Information Processing in Medical Imaging},
pages = {359--370},
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Yigitsoy, Mehmet; Wachinger, Christian; Navab, Nassir
Temporal groupwise registration for motion modeling Proceedings Article
In: Biennial International Conference on Information Processing in Medical Imaging, pp. 648–659, Springer Berlin Heidelberg 2011.
@inproceedings{yigitsoy2011temporal,
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year = {2011},
date = {2011-01-01},
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Yigitsoy, Mehmet; Wachinger, Christian; Navab, Nassir
Manifold learning for image-based breathing gating in MRI Proceedings Article
In: Proceedings of SPIE, pp. 796210, 2011.
@inproceedings{yigitsoy2011manifold,
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Demirci, Stefanie; Bigdelou, Ali; Wang, Lejing; Wachinger, Christian; Baust, Maximilian; Tibrewal, Radhika; Ghotbi, Reza; Eckstein, Hans-Henning; Navab, Nassir
3D stent recovery from one x-ray projection Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 178–185, Springer Berlin Heidelberg 2011.
@inproceedings{demirci20113d,
title = {3D stent recovery from one x-ray projection},
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date = {2011-01-01},
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Wachinger, Christian
Ultrasound Mosaicing and Motion Modeling: Applications in Medical Image Registration PhD Thesis
München, Technische Universität München, Diss., 2011, 2011.
@phdthesis{wachinger2011ultrasound,
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2010
Gutierrez-Becker, Benjamin; Arambula, Fernando; Guzman, Mario; Benavides, Jesus
Automatic segmentation of the cerebellum of fetuses on 3D ultrasound images, using a 3D Point Distribution Model Proceedings
IEEE 2010.
@proceedings{becker2010automatic,
title = {Automatic segmentation of the cerebellum of fetuses on 3D ultrasound images, using a 3D Point Distribution Model},
author = {Benjamin Gutierrez-Becker and Fernando Arambula and Mario Guzman and Jesus Benavides},
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date = {2010-01-01},
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Wachinger, Christian; Yigitsoy, Mehmet; Navab, Nassir
Manifold learning for image-based breathing gating with application to 4D ultrasound Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 26–33, Springer Berlin Heidelberg 2010.
@inproceedings{wachinger2010manifold,
title = {Manifold learning for image-based breathing gating with application to 4D ultrasound},
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Wachinger, Christian; Mateus, Diana; Keil, Andreas; Navab, Nassir
Manifold learning for patient position detection in MRI Proceedings Article
In: 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro, pp. 1353–1356, IEEE 2010.
@inproceedings{wachinger2010manifoldb,
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Wachinger, Christian; Navab, Nassir
Structural image representation for image registration Proceedings Article
In: Proceedings of IEEE Computer Vision and Pettern Recognition Workshops, pp. 23–30, 2010.
@inproceedings{wachinger2010structural,
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Wachinger, Christian; Navab, Nassir
Manifold Learning for Multi-Modal Image Registration Proceedings Article
In: Proceedings of the British Machine Vision Conference, pages, pp. 82–1, 2010.
@inproceedings{wachinger2010manifoldb,
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Glocker, Benjamin; Navab, Nassir; Wachinger, Christian; Zeltner, Jochen
Verfahren zum Kombinieren von Bildern und Magnetresonanzgerät Miscellaneous
2010, (DE Patent 102,008,045,278).
@misc{glocker2010verfahren,
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2009
Wachinger, Christian; Navab, Nassir
Similarity metrics and efficient optimization for simultaneous registration Proceedings Article
In: Computer Vision and Pattern Recognition, 2009. CVPR 2009. IEEE Conference on, pp. 667–674, IEEE 2009.
@inproceedings{wachinger2009similarity,
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Wachinger, Christian; Navab, Nassir
Alignment of viewing-angle dependent ultrasound images Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 779–786, Springer Berlin Heidelberg 2009.
@inproceedings{wachinger2009alignment,
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Glocker, B; Wachinger, C; Zeltner, J; Paragios, N; Komodakis, N; Hansen, M; Navab, N
MRI Composing for Whole Body Imaging Journal Article
In: Bildverarbeitung für die Medizin 2009, pp. 420–424, 2009.
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Wachinger, Christian; Shams, Ramtin; Navab, Nassir
Towards an Estimation of Acoustic Impedance from Multiple Ultrasound Images Journal Article
In: Bildverarbeitung für die Medizin 2009, pp. 405–409, 2009.
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Wachinger, Christian; Baumann, Simon; Zeltner, Jochen; Glocker, Ben; Navab, Nassir
Sphere extraction in MR images with application to whole-body MRI Proceedings Article
In: SPIE Medical Imaging, pp. 72594J–72594J, International Society for Optics and Photonics 2009.
@inproceedings{wachinger2009sphere,
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2008
Wachinger, Christian; Wein, Wolfgang; Navab, Nassir
Registration Strategies and Similarity Measures for Three-dimensional Ultrasound Mosaicing1 Journal Article
In: Academic radiology, vol. 15, no. 11, pp. 1404–1415, 2008.
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Wachinger, Christian; Glocker, Ben; Zeltner, Jochen; Paragios, Nikos; Komodakis, Nikos; Hansen, Michael Sass; Navab, Nassir
Deformable mosaicing for whole-body MRI Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 113–121, Springer Berlin Heidelberg 2008.
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}
Wachinger, Christian; Shams, Ramtin; Navab, Nassir
Estimation of acoustic impedance from multiple ultrasound images with application to spatial compounding Proceedings Article
In: Computer Vision and Pattern Recognition Workshops, 2008. CVPRW'08. IEEE Computer Society Conference on, pp. 1–8, IEEE 2008.
@inproceedings{wachinger2008estimation,
title = {Estimation of acoustic impedance from multiple ultrasound images with application to spatial compounding},
author = {Wachinger, Christian and Shams, Ramtin and Navab, Nassir},
year = {2008},
date = {2008-01-01},
urldate = {2008-01-01},
booktitle = {Computer Vision and Pattern Recognition Workshops, 2008. CVPRW'08. IEEE Computer Society Conference on},
pages = {1--8},
organization = {IEEE},
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tppubtype = {inproceedings}
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Wachinger, Christian; Navab, Nassir
Ultrasound specific similarity measures for three-dimensional mosaicing Journal Article
In: SPIE Medical Imaging, San Diego, California, USA, pp. 69140F, 2008.
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title = {Ultrasound specific similarity measures for three-dimensional mosaicing},
author = {Wachinger, Christian and Navab, Nassir},
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date = {2008-01-01},
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journal = {SPIE Medical Imaging, San Diego, California, USA},
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Wachinger, C; Navab, N
Ultrasound specific similarity measures for three-dimensional mosaicing [6914-14] Proceedings Article
In: PROCEEDINGS-SPIE THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING, pp. 6914, International Society for Optical Engineering; 1999 2008.
@inproceedings{wachinger2008ultrasoundb,
title = {Ultrasound specific similarity measures for three-dimensional mosaicing [6914-14]},
author = {Wachinger, C and Navab, N},
year = {2008},
date = {2008-01-01},
urldate = {2008-01-01},
booktitle = {PROCEEDINGS-SPIE THE INTERNATIONAL SOCIETY FOR OPTICAL ENGINEERING},
volume = {6914},
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pages = {6914},
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2007
Wachinger, Christian; Wein, Wolfgang; Navab, Nassir
Three-dimensional ultrasound mosaicing Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 327–335, Springer Berlin Heidelberg 2007.
@inproceedings{wachinger2007three,
title = {Three-dimensional ultrasound mosaicing},
author = {Wachinger, Christian and Wein, Wolfgang and Navab, Nassir},
year = {2007},
date = {2007-01-01},
urldate = {2007-01-01},
booktitle = {International Conference on Medical Image Computing and Computer-Assisted Intervention},
pages = {327--335},
organization = {Springer Berlin Heidelberg},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
2006
Keil, Andreas; Wachinger, Christian; Brinker, Gerhard; Thesen, Stefan; Navab, Nassir
Patient position detection for SAR optimization in magnetic resonance imaging Proceedings Article
In: International Conference on Medical Image Computing and Computer-Assisted Intervention, pp. 49–57, Springer Berlin Heidelberg 2006.
@inproceedings{keil2006patient,
title = {Patient position detection for SAR optimization in magnetic resonance imaging},
author = {Keil, Andreas and Wachinger, Christian and Brinker, Gerhard and Thesen, Stefan and Navab, Nassir},
year = {2006},
date = {2006-01-01},
urldate = {2006-01-01},
booktitle = {International Conference on Medical Image Computing and Computer-Assisted Intervention},
pages = {49--57},
organization = {Springer Berlin Heidelberg},
keywords = {},
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tppubtype = {inproceedings}
}
2005
Wachinger, Christian; Somlo, Patric; Hudelot, Celine; Bloch, Isabelle
Automatic Construction of Statistical Children Brain Atlas with MRI Journal Article
In: 2005.
@article{wachinger2005automatic,
title = {Automatic Construction of Statistical Children Brain Atlas with MRI},
author = {Wachinger, Christian and Somlo, Patric and Hudelot, Celine and Bloch, Isabelle},
year = {2005},
date = {2005-01-01},
urldate = {2005-01-01},
keywords = {},
pubstate = {published},
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}
Wachinger, Christian; Keil, Andreas; Navab, Nassir
Positioning on Magnetic Resonance Tomography Journal Article
In: 2005.
@article{wachinger2005positioning,
title = {Positioning on Magnetic Resonance Tomography},
author = {Wachinger, Christian and Keil, Andreas and Navab, Nassir},
year = {2005},
date = {2005-01-01},
urldate = {2005-01-01},
keywords = {},
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tppubtype = {article}
}
2004
Wachinger, Christian; Pock, Michael; Rentrop, Peter
Simulation of the inverted pendulum Journal Article
In: 2004.
@article{wachinger2004simulation,
title = {Simulation of the inverted pendulum},
author = {Wachinger, Christian and Pock, Michael and Rentrop, Peter},
year = {2004},
date = {2004-01-01},
urldate = {2004-01-01},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
Fingerle, Benjamin; Wachinger, Christian
5 The mathematics of (Auto-) Calibrating AR Systems Journal Article
In: 2nd Joint Advanced Summer School 2004 Course 3: Ubiquitous Tracking for Augmented Reality, pp. 75, 2004.
@article{fingerle20045,
title = {5 The mathematics of (Auto-) Calibrating AR Systems},
author = {Fingerle, Benjamin and Wachinger, Christian},
year = {2004},
date = {2004-01-01},
urldate = {2004-01-01},
journal = {2nd Joint Advanced Summer School 2004 Course 3: Ubiquitous Tracking for Augmented Reality},
pages = {75},
keywords = {},
pubstate = {published},
tppubtype = {article}
}
0000
Narazani, Marla; Sarasua, Ignacio; Pölsterl, Sebastian; Lizarraga, Aldana; Yakushev, Igor; Wachinger, Christian
Is a PET all you need? A multi-modal study for Alzheimer's disease using 3D CNNs Proceedings Article
In: Medical Image Computing and Computer-Assisted Intervention (MICCAI), 0000.
@inproceedings{Narazani2022,
title = {Is a PET all you need? A multi-modal study for Alzheimer's disease using 3D CNNs},
author = {Marla Narazani and Ignacio Sarasua and Sebastian Pölsterl and Aldana Lizarraga and Igor Yakushev and Christian Wachinger},
booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
abstract = {Alzheimer’s Disease (AD) is the most common form of dementia and often difficult to diagnose due to the multifactorial etiology of dementia. Recent works on neuroimaging-based computer-aided diagnosis with deep neural networks (DNNs) showed that fusing structural magnetic resonance images (sMRI) and fluorodeoxyglucose positron emission tomography (FDG-PET) leads to improved accuracy in a study population of healthy controls and subjects with AD. However, this result conflicts with the established clinical knowledge that FDG-PET better captures AD-specific pathologies than sMRI. Therefore, we propose a framework for the systematic evaluation of multi-modal DNNs and critically re-evaluate single- and multi-modal DNNs based on FDG-PET and sMRI for binary healthy vs. AD, and three-way healthy/mild cognitive impairment/AD classification. Our experiments demonstrate that a single-modality network using FDG-PET performs better than MRI (accuracy 0.91 vs 0.87) and does not show improvement when combined. This conforms with the established clinical knowledge on AD biomarkers, but raises questions about the true benefit of multi-modal DNNs. We argue that future work on multi-modal fusion should systematically assess the contribution of individual modalities following our proposed evaluation framework. Finally, we encourage the community to go beyond healthy vs. AD classification and focus on differential diagnosis of dementia, where fusing multi-modal image information conforms with a clinical need.},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}
Sarasua, Ignacio; Pölsterl, Sebastian; Wachinger, Christian
CASHformer: Cognition Aware SHape Transformer for Longitudinal Analysis Proceedings Article
In: Medical Image Computing and Computer-Assisted Intervention (MICCAI), 0000.
@inproceedings{Sarasua2022b,
title = {CASHformer: Cognition Aware SHape Transformer for Longitudinal Analysis},
author = {Ignacio Sarasua and Sebastian Pölsterl and Christian Wachinger},
booktitle = {Medical Image Computing and Computer-Assisted Intervention (MICCAI)},
keywords = {},
pubstate = {published},
tppubtype = {inproceedings}
}